MCP profile

Github Cyanheads Protein Mcp Server

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

Developer ToolsPackageJavaScript/TypeScriptOpen SourceExternal

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Last updated

March 16, 2026

Visibility

Public

ByRegistry

About This MCP Server

protein-mcp-server A powerful Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt. Features multi-provider orchestration, comprehensive structural analysis tools, and full observability. Built for performance and scalability, with native support for serverless deployment (Cloudflare Workers).

This server provides a powerful suite of tools for accessing and analyzing protein structure data.

Capabilities

This server provides a powerful suite of tools for accessing and analyzing protein structure data.

Tools & Endpoints1

Why Use Github Cyanheads Protein Mcp Server?

Declarative Tools: Define agent capabilities in single, self-contained files. The framework handles registration, validation, and execution.
Robust Error Handling: A unified McpError system ensures consistent, structured error responses.
Pluggable Authentication: Secure your server with zero-fuss support for none, jwt, or oauth modes.
Abstracted Storage: Swap storage backends (in-memory, filesystem, Supabase, Cloudflare KV/R2) without changing business logic.
Full-Stack Observability: Deep insights with structured logging (Pino) and optional, auto-instrumented OpenTelemetry for traces and metrics.
Dependency Injection: Built with tsyringe for a clean, decoupled, and testable architecture.
Edge-Ready: Write code once and run it seamlessly on your local machine or at the edge on Cloudflare Workers.

Specifications

Status

live

Industry

Developer Tools

Requirements

• Bun v1.2.0 or higher.

Hosting

Hosting Options

Package

API

Integrate this server into your application. Choose a connection method below.

Configure

Configuration

json

{
  "mcpServers": {
    "protein-mcp-server": {
      "command": "bunx",
      "args": ["protein-mcp-server@latest"],
      "env": {
        "MCP_LOG_LEVEL": "info"
      }
    }
  }
}

Performance

Usage

Quick Reference

Name: Github Cyanheads Protein Mcp Server
Function: MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
Available Tools: This server provides a powerful suite of tools for accessing and analyzing protein structure data.
Transport: Package
Language: JavaScript/TypeScript
Source: External (Registry)
License: Open Source