Last updated
March 16, 2026
MCP profile
Github Cyanheads Protein Mcp Server
MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
Developer ToolsPackageJavaScript/TypeScriptOpen SourceExternal
Visibility
Public
ByRegistry
About This MCP Server
protein-mcp-server A powerful Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt. Features multi-provider orchestration, comprehensive structural analysis tools, and full observability. Built for performance and scalability, with native support for serverless deployment (Cloudflare Workers).
This server provides a powerful suite of tools for accessing and analyzing protein structure data.
Capabilities
This server provides a powerful suite of tools for accessing and analyzing protein structure data.
Tools & Endpoints1
Why Use Github Cyanheads Protein Mcp Server?
- Declarative Tools: Define agent capabilities in single, self-contained files. The framework handles registration, validation, and execution.
- Robust Error Handling: A unified McpError system ensures consistent, structured error responses.
- Pluggable Authentication: Secure your server with zero-fuss support for none, jwt, or oauth modes.
- Abstracted Storage: Swap storage backends (in-memory, filesystem, Supabase, Cloudflare KV/R2) without changing business logic.
- Full-Stack Observability: Deep insights with structured logging (Pino) and optional, auto-instrumented OpenTelemetry for traces and metrics.
- Dependency Injection: Built with tsyringe for a clean, decoupled, and testable architecture.
- Edge-Ready: Write code once and run it seamlessly on your local machine or at the edge on Cloudflare Workers.
Specifications
Status
live
Industry
Developer Tools
Category
General
Server type
Package
Language
JavaScript/TypeScript
License
Open Source
Verified
Yes
Requirements
- • Bun v1.2.0 or higher.
Hosting
Hosting Options
- Package
API
Integrate this server into your application. Choose a connection method below.
1
Configure
Configuration
json
{
"mcpServers": {
"protein-mcp-server": {
"command": "bunx",
"args": ["protein-mcp-server@latest"],
"env": {
"MCP_LOG_LEVEL": "info"
}
}
}
}Performance
Usage
Quick Reference
- Name
- Github Cyanheads Protein Mcp Server
- Function
- MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
- Available Tools
- This server provides a powerful suite of tools for accessing and analyzing protein structure data.
- Transport
- Package
- Language
- JavaScript/TypeScript
- Source
- External (Registry)
- License
- Open Source
Get started
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